T-Virus (Resident Evil) can control them by instinct.
The real zombies portrayed in Haitian culture are controlled by sorcerers that invoked and that only they can put them to death.
With the Darkness ÄRM, Grave Hail, Halloween (Marchen Awakens Romance) can call his victims from the dead and control them.
Tao Jun (Shaman King) is a Daoshi, a shaman able to transfer a spirit in its dead body and use talismans to manipulate them.
As Sternritter "Z" - The Zombie Giselle Gewelle (Bleach) anyone who cuts her and has Giselle's blood splattered on them completely becomes a zombie under her control. For example her dead friend Bambietta.